Utah Valley University - BIOL490R (Special Topics)
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Week 1 | Week 5 | Week 9 | Week 13
Week 2 | Week 6 | Week 10 | Week 14
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For your consideration:
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Practice
Can you understand what the following code does and why it works (or doesn’t)?
echo "There are $(ls -1 *.txt | wc -l) files in this directory."What about this?
echo "There are $(history | grep -c "bash") instances where 'bash' turns up in terminal history."And this?
ls -1 | head -2 > first_2_files.txt && cat first_2_files.txt && rm first_2_files.txtAnd, finally, this?
cat file_that_does_not_exist.txt 2> err.txt | wc -l && cat err.txtFor your consideration:
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Which fastq file associated with Assignment_4 contains the following sequence:
CCTTCATGCTGTCCTGCAATTACGATAGCATTTCTTTGACGACGACFor your consideration:
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Case Study 2 - Reproducibly downloading stuff (BDS p. 120)
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Video series on the CHPC
SLURM Presentation from CHPC
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Case Study 3 - Assemble a metagenome on the remote cluster
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Case Study 4 - Download NCBI marker genes and use Unix tools to build a custom RDP-Classifier-compatible reference database
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